Standards in Genomic Sciences

Volume 1, Issue 1

Editorial/Commentary

Short Genome Reports

Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T)

Alla Lapidus, Rüdiger Pukall, Kurt LaButtii, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker, Amrita Pati, Natalia Ivanova, Konstantinos Mavrommatis, Amy Chen, Krishna Palaniappan, Patrik Dʼhaeseleer, Patrick Chain, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(1):3-11

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Short Genome Reports

Complete genome sequence of Kytococcus sedentarius type strain (541T)

David Sims, Thomas Brettin, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Galina Ovchinnikova, Amrita Pati, Natalia Ivanova, Konstantinos Mavrommatis, Amy Chen, Krishna Palaniappan, Patrik Dʼhaeseleer, Patrick Chain, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Susanne Schneider, Markus Göker, Rüdiger Pukall, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(1):12-20

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Short Genome Reports

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T)

Miriam Land, Rüdiger Pukall, Birte Abt, Markus Göker, Manfred Rohde, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Loren Hauser, Yun-Juan Chang, Cynthia C. Jefferies, Elizabeth Saunders, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Alla Lapidus

Stand Genomic Sci 2009; 1(1):21-28

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Short Genome Reports

Complete genome sequence of Desulfomicrobium baculatum type strain (XT)

Alex Copeland, Stefan Spring, Markus Göker, Susanne Schneider, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavrommatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia C. Jeffries, Linda Meincke, David Sims, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Susan Lucas

Stand Genomic Sci 2009; 1(1):29-37

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Short Genome Reports

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)

Alicia Clum, Matt Nolan, Elke Lang, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavrommatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Markus Göker, Stefan Spring, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia C. Jeffries, Patrick Chain, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Alla Lapidus

Stand Genomic Sci 2009; 1(1):38-45

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Short Genome Reports

Complete genome sequence of Actinosynnema mirum type strain (101T)

Miriam Land, Alla Lapidus, Shanmugam Mayilraj, Feng Chen, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Olga Chertkov, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Loren Hauser, Yun-Juan Chang, Cynthia C. Jeffries, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, Brian J. Tindall, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(1):46-53

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Short Genome Reports

Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)

Cliff Han, Stefan Spring, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia C. Jeffries, Elizabeth Saunders, Olga Chertkov, Thomas Brettin, Markus Göker, Manfred Rohde, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and John C. Detter

Stand Genomic Sci 2009; 1(1):54-62

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Standard Operating Procedures

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

Konstantinos Mavromatis, Natalia N. Ivanova, I-Min A. Chen, Ernest Szeto, Victor M. Markowitz and Nikos C. Kyrpides

Stand Genomic Sci 2009; 1(1):63-67

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Community Dialog

Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7

Dawn Field, Peter Sterk, Nikos Kyrpides, Renzo Kottmann, Frank Oliver Glöckner, Lynette Hirschman, George M. Garrity, John Wooley and Paul Gilna

Stand Genomic Sci 2009; 1(1):68-71

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Community Dialog

Meeting report for SIGS1: First Conference of the Standards in Genomic Sciences eJournal

Oranmiyan W. Nelson, Scott H. Harrison and George M. Garrity

Stand Genomic Sci 2009; 1(1):72-77

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White Papers

Studies on Monitoring and Tracking Genetic Resources: An Executive Summary

George M. Garrity, Lorraine M. Thompson, David W. Ussery, Norman Paskin, Dwight Baker, Philippe Desmeth, D.E. Schindel and P.S. Ong

Stand Genomic Sci 2009; 1(1):78-86

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