Standards in Genomic Sciences

Volume 1, Issue 2

Editorial/Commentary

Ground Truth

George M. Garrity

Stand Genomic Sci 2009; 1(2):91-92

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Short Genome Reports

Complete genome sequence of Cryptobacterium curtum type strain (12-3T)

Konstantinos Mavrommatis, Rüdiger Pukall, Christine Rohde, Feng Chen, David Sims, Thomas Brettin, Cheryl Kuske, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Galina Ovchinnikova, Amrita Pati, Natalia Ivanova, Amy Chen, Krishna Palaniappan, Patrick Chain, Patrik Dʼhaeseleer, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Manfred Rohde, Hans-Peter Klenk and Nikos C. Kyrpides

Stand Genomic Sci 2009; 1(2):93-100

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Short Genome Reports

Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T)

Konstantinos Mavrommatis, Sabine Gronow, Elizabeth Saunders, Miriam Land, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati, Natalia Ivanova, Amy Chen, Krishna Palaniappan, Patrick Chain, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Thomas Brettin, John C. Detter, Cliff Han, James Bristow, Markus Göker, Manfred Rohde, Jonathan A. Eisen, Victor Markowitz, Nikos C. Kyrpides, Hans-Peter Klenk and Philip Hugenholtz

Stand Genomic Sci 2009; 1(2):101-109

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Short Genome Reports

Complete genome sequence of Sanguibacter keddieii type strain (ST-74T)

Natalia Ivanova, Johannes Sikorski, David Sims, Thomas Brettin, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Patrik Dʼhaeseleer, Patrick Chain, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Markus Göker, Rüdiger Pukall, Hans-Peter Klenk and Nikos C. Kyrpides

Stand Genomic Sci 2009; 1(2):110-118

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Short Genome Reports

Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T)

Alex Copeland, Alla Lapidus, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Mikhailova, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Patrick Chain, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Olga Chertkov, Thomas Brettin, John C. Detter, Cliff Han, Zahid Ali, Brian J. Tindall, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(2):119-125

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Short Genome Reports

Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT)

Natalia Ivanova, Sabine Gronow, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, David Bruce, Lynne Goodwin, Thomas Brettin, John C. Detter, Cliff Han, Sam Pitluck, Natalia Mikhailova, Amrita Pati, Konstantinos Mavrommatis, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Christine Rohde, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(2):126-132

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Short Genome Reports

Complete genome sequence of Dyadobacter fermentans type strain (NS114T)

Elke Lang, Alla Lapidus, Olga Chertkov, Thomas Brettin, John C. Detter, Cliff Han, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Marcus Kopitz, David Bruce, Lynne Goodwin, Sam Pitluck, Galina Ovchinnikova, Amrita Pati, Natalia Ivanova, Konstantinos Mavrommatis, Amy Chen, Krishna Palaniappan, Patrick Chain, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Markus Göker, Manfred Rohde, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(2):133-140

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Short Genome Reports

Complete genome sequence of Saccharomonospora viridis type strain (P101T)

Amrita Pati, Johannes Sikorski, Matt Nolan, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter, Cheryl Kuske, David Bruce, Lynne Goodwin, Patrick Chain, Patrik Dʼhaeseleer, Amy Chen, Krishna Palaniappan, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Manfred Rohde, Brian J. Tindall, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(2):141-149

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Short Genome Reports

Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

Stephanie Malfatti, Brian J. Tindall, Susanne Schneider, Regine Fähnrich, Alla Lapidus, Kurt LaButtii, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Iain Anderson, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Patrik Dʼhaeseleer, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Patrick Chain

Stand Genomic Sci 2009; 1(2):150-158

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Short Genome Reports

Complete genome sequence of Anaerococcus prevotii type strain (PC1T)

Kurt LaButti, Rüdiger Pukall, Katja Steenblock, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Elizabeth Saunders, Thomas Brettin, John C. Detter, Cliff Han, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Alla Lapidus

Stand Genomic Sci 2009; 1(2):159-165

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Short Genome Reports

Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

Alex Copeland, Johannes Sikorski, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Rüdiger Pukall, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter, Cheryl Kuske, David Bruce, Lynne Goodwin, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amy Chen, Krishna Palaniappan, Patrick Chain, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and John C. Detter

Stand Genomic Sci 2009; 1(2):166-173

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Short Genome Reports

Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255 T)

Elizabeth Saunders, Rüdiger Pukall, Birte Abt, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Linda Meincke, David Sims, Thomas Brettin, John C. Detter, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Cliff Han

Stand Genomic Sci 2009; 1(2):174-182

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Short Genome Reports

Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1

Iain J. Anderson, Hui Sun, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, Susan Lucas, Kerrie Barry, Miriam Land, Paul Richardson, Harald Huber and Nikos C. Kyrpides

Stand Genomic Sci 2009; 1(2):183-188

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Short Genome Reports

Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1

Iain J. Anderson, Magdalena Sieprawska-Lupa, Alla Lapidus, Matt Nolan, Alex Copeland, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, Kerrie Barry, Elizabeth Saunders, Cliff Han, Thomas Brettin, John C. Detter, David Bruce, Natalia Mikhailova, Sam Pitluck, Loren Hauser, Miriam Land, Susan Lucas, Paul Richardson, William B. Whitman and Nikos C. Kyrpides

Stand Genomic Sci 2009; 1(2):189-196

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Short Genome Reports

Complete genome sequence of Methanocorpusculum labreanum type strain Z

Iain J. Anderson, Magdalena Sieprawska-Lupa, Eugene Goltsman, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, Kerrie Barry, Sam Pitluck, Loren Hauser, Miriam Land, Susan Lucas, Paul Richardson, William B. Whitman and Nikos C. Kyrpides

Stand Genomic Sci 2009; 1(2):197-203

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Research Articles

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes

Peter F. Hallin, Hans-Henrik Stærfeldt, Eva Rotenberg, Tim T. Binnewies, Craig J. Benham and David W. Ussery

Stand Genomic Sci 2009; 1(2):204-215

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