Standards in Genomic Sciences

Volume 1, Issue 3

Editorial/Commentary

Standards and standard-compliance

Peter Sterk

Stand Genomic Sci 2009; 1(3):216-217

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Halorhabdus utahensis type strain (AX-2T)

Iain Anderson, Brian J. Tindall, Helga Pomrenke, Markus Göker, Alla Lapidus, Matt Nolan, Alex Copeland, Tijana Glavina Del Rio, Feng Chen, Hope Tice, Jan-Fang Cheng, Susan Lucas, Olga Chertkov, David Bruce, Thomas Brettin, John C. Detter, Cliff Han, Lynne Goodwin, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Sam Pitluck, Amrita Pati, Konstantinos Mavromatis, Natalia Ivanova, Galina Ovchinnikova, Amy Chen, Krishna Palaniappan, Patrick Chain, Manfred Rohde, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(3):218-225

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Kangiella koreensis type strain (SW-125T)

Cliff Han, Johannes Sikorski, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Alex Copeland, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, David Bruce, Lynne Goodwin, Sam Pitluck, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Elizabeth Saunders, Thomas Brettin, Markus Göker, Brian J. Tindall, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and John C. Detter

Stand Genomic Sci 2009; 1(3):226-233

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T)

Rüdiger Pukall, Alla Lapidus, Matt Nolan, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Olga Chertkov, David Bruce, Lynne Goodwin, Cheryl Kuske, Thomas Brettin, John C. Detter, Cliff Han, Sam Pitluck, Amrita Pati, Konstantinos Mavrommatis, Natalia Ivanova, Galina Ovchinnikova, Amy Chen, Krishna Palaniappan, Susanne Schneider, Manfred Rohde, Patrick Chain, Patrik Dʼhaeseleer, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Nikos C. Kyrpides, Hans-Peter Klenk and Philip Hugenholtz

Stand Genomic Sci 2009; 1(3):234-241

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575T)

Stefan Spring, Alla Lapidus, Maren Schröder, Dorothea Gleim, David Sims, Linda Meincke, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Elizabeth Saunders, Thomas Brettin, John C. Detter, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C Kyrpides, Hans-Peter Klenk and Cliff Han

Stand Genomic Sci 2009; 1(3):242-253

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T)

Mansi Chovatia, Johannes Sikorski, Maren Schröder, Alla Lapidus, Matt Nolan, Hope Tice, Tijana Glavina Del Rio, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Elizabeth Saunders, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, Stefan Spring, Jim Bristow, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Jonathan A. Eisen

Stand Genomic Sci 2009; 1(3):254-261

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134T)

Rüdiger Pukall, Gabriele Gehrich-Schröter, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Alex Copeland, Elizabeth Saunders, Thomas Brettin, John C. Detter, David Bruce, Lynne Goodwin, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Cliff Han

Stand Genomic Sci 2009; 1(3):262-269

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Halomicrobium mukohataei type strain (arg-2T)

Brian J. Tindall, Susanne Schneider, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Mikhailova, Amrita Pati, Natalia Ivanova, Konstantinos Mavrommatis, Amy Chen, Krishna Palaniappan, Patrick Chain, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Thomas Brettin, Cliff Han, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk, Nikos C. Kyrpides and John C. Detter

Stand Genomic Sci 2009; 1(3):270-277

PubMedPubMed CentralView ArticleDownload PDF

Community Dialog

Meeting Report: Metagenomics, Metadata and Meta-analysis (M3) Special Interest Group at ISMB 2009

Dawn Field, Iddo Friedberg, Peter Sterk, Renzo Kottmann, Frank Oliver Glöckner, Lynette Hirschman, George M. Garrity, Guy Cochrane, John Wooley and Jack Gilbert

Stand Genomic Sci 2009; 1(3):278-282

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Rhodothermus marinus type strain (R-10T)

Matt Nolan, Brian J. Tindall, Helga Pomrenke, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, Cliff Han, David Bruce, Lynne Goodwin, Patrick Chain, Sam Pitluck, Galina Ovchinikova, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Thomas Brettin, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and John C. Detter

Stand Genomic Sci 2009; 1(3):283-291

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T)

Chris Munk, Alla Lapidus, Alex Copeland, Marlen Jando, Shanmugam Mayilraj, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin, Patrick Chain, Sam Pitluck, Markus Göker, Galina Ovchinikova, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2009; 1(3):292-299

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Streptobacillus moniliformis type strain (9901T)

Matt Nolan, Sabine Gronow, Alla Lapidus, Natalia Ivanova, Alex Copeland, Susan Lucas, Tijana Glavina Del Rio, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, David Sims, Linda Meincke, David Bruce, Lynne Goodwin, Thomas Brettin, Cliff Han, John C. Detter, Galina Ovchinikova, Amrita Pati, Konstantinos Mavromatis, Natalia Mikhailova, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Cathrin Spröer, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Patrick Chain

Stand Genomic Sci 2009; 1(3):300-307

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)

Alicia Clum, Brian J. Tindall, Johannes Sikorski, Natalia Ivanova, Konstantinos Mavrommatis, Susan Lucas, Tijana Glavina,  Del Rio, Matt Nolan, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter, Cheryl Kuske, David Bruce, Lynne Goodwin, Galina Ovchinikova, Amrita Pati, Natalia Mikhailova, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Alla Lapidus

Stand Genomic Sci 2009; 1(3):308-316

PubMedPubMed CentralView ArticleDownload PDF