Standards in Genomic Sciences

Volume 5, Issue 1

Short Genome Reports

Draft genome sequence of the coccolithovirus EhV-84

Jozef I. Nissimov, Charlotte A. Worthy, Paul Rooks, Johnathan A. Napier, Susan A. Kimmance, Matthew R. Henn, Hiroyuki Ogata and Michael J. Allen

Stand Genomic Sci 2011; 5(1):1-11

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Short Genome Reports

Complete genome sequence of Staphylothermus hellenicus P8T

Iain Anderson, Reinhard Wirth, Susan Lucas, Alex Copeland, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Samuel Pitluck, Karen Davenport, John C. Detter, Cliff Han, Roxanne Tapia, Miriam Land, Loren Hauser, Amrita Pati, Natalia Mikhailova, Tanja Woyke, Hans-Peter Klenk, Nikos Kyrpides and Natalia Ivanova

Stand Genomic Sci 2011; 5(1):12-20

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Short Genome Reports

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262T)

Tanja Woyke, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Manfred Rohde, Romano Mwirichia, Johannes Sikorski, Brian J. Tindall, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk and Nikos C. Kyrpides

Stand Genomic Sci 2011; 5(1):21-29

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Short Genome Reports

Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)

Konstantinos Liolios, Johannes Sikorski, Meagan Lu, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Oleg Kotsyurbenko, Manfred Rohde, Brian J. Tindall, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk and Nikos C. Kyrpides

Stand Genomic Sci 2011; 5(1):30-40

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Short Genome Reports

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20T)

Amrita Pati, Sabine Gronow, Megan Lu, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis, Natalia Mikhailova, Marcel Huntemann, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, John C. Detter, Evelyne-Marie Brambilla, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Natalia Ivanova

Stand Genomic Sci 2011; 5(1):41-49

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Short Genome Reports

Complete genome sequence of Ferroglobus placidus AEDII12DO

Iain Anderson, Carla Risso, Dawn Holmes, Susan Lucas, Alex Copeland, Alla Lapidus, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Samuel Pitluck, Elizabeth Saunders, Thomas Brettin, John C. Detter, Cliff Han, Roxanne Tapia, Frank Larimer, Miriam Land, Loren Hauser, Tanja Woyke, Derek Lovley, Nikos Kyrpides and Natalia Ivanova

Stand Genomic Sci 2011; 5(1):50-60

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Short Genome Reports

Genome sequence of Haemophilus parasuis strain 29755

Michael A. Mullins, Karen B. Register, Darrell O. Bayles, David W. Dyer, Joanna S. Kuehn and Gregory J. Phillips

Stand Genomic Sci 2011; 5(1):61-68

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Short Genome Reports

Complete genome sequence of Enterobacter lignolyticus SCF1

Kristen M. DeAngelis, Patrik DʼHaeseleer, Dylan Chivian, Julian L. Fortney, Jane Khudyakov, Blake Simmons, Hannah Woo, Adam P. Arkin, Karen Walston Davenport, Lynne Goodwin, Amy Chen, Natalia Ivanova, Nikos C. Kyrpides, Konstantinos Mavromatis, Tanja Woyke and Terry C. Hazen

Stand Genomic Sci 2011; 5(1):69-85

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Short Genome Reports

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10T)

Alla Lapidus, Olga Chertkov, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Manfred Rohde, Birte Abt, Stefan Spring, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Tanja Woyke

Stand Genomic Sci 2011; 5(1):86-96

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Short Genome Reports

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)

Yun-juan Chang, Miriam Land, Loren Hauser, Olga Chertkov, Tijana Glavina Del Rio, Matt Nolan, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Cliff Han, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Konstantinos Mavromatis, Konstantinos Liolios, Thomas Brettin, Anne Fiebig, Manfred Rohde, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Alla Lapidus

Stand Genomic Sci 2011; 5(1):97-111

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Short Genome Reports

Complete genome sequence of Tolumonas auensis type strain (TA 4T)

Olga Chertkov, Alex Copeland, Susan Lucas, Alla Lapidus, Kerrie W. Berry, John C. Detter, Tijana Glavina Del Rio, Nancy Hammon, Eileen Dalin, Hope Tice, Sam Pitluck, Paul Richardson, David Bruce, Lynne Goodwin, Cliff Han, Roxanne Tapia, Elizabeth Saunders, Jeremy Schmutz, Thomas Brettin, Frank Larimer, Miriam Land, Loren Hauser, Stefan Spring, Manfred Rohde, Nikos C. Kyrpides, Natalia Ivanova, Markus Göker, Harry R. Beller, Hans-Peter Klenk and Tanja Woyke

Stand Genomic Sci 2011; 5(1):112-120

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Short Genome Reports

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.

Hans-Peter Klenk, Alla Lapidus, Olga Chertkov, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Cliff Han, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Chris Daum, Amy Chen, Krishna Palaniappan, Yun-juan Chang, Miriam Land, Loren Hauser, Cynthia D. Jeffries, John C. Detter, Manfred Rohde, Birte Abt, Rüdiger Pukall, Markus Göker, James Bristow, Victor Markowitz, Philip Hugenholtz and Jonathan A. Eisen

Stand Genomic Sci 2011; 5(1):121-134

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Short Genome Reports

Draft genome sequence of Caminibacter mediatlanticus strain TB-2T, an epsilonproteobacterium isolated from a deep-sea hydrothermal vent

Donato Giovannelli, Steven Ferriera, Justin Johnson, Saul Kravitz, Ileana Pérez-Rodríguez, Jessica Ricci, Charles OʼBrien, James W. Voordeckers, Elisabetta Bini and Costantino Vetriani

Stand Genomic Sci 2011; 5(1):135-143

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Short Genome Reports

Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1

Aristeidis Kallimanis, Eugenia Karabika, Kostantinos Mavromatis, Alla Lapidus, Kurt M. LaButti, Konstantinos Liolios, Natalia Ivanova, Lynne Goodwin, Tanja Woyke, Athanasios D. Velentzas, Angelos Perisynakis, Christos C. Ouzounis, Nikos C. Kyrpides, Anna I. Koukkou and Constantin Drainas

Stand Genomic Sci 2011; 5(1):144-153

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Short Genome Reports

Solving the Problem: Genome Annotation Standards before the Data Deluge

William Klimke, Claire OʼDonovan, Owen White, J. Rodney Brister, Karen Clark, Boris Fedorov, Ilene Mizrachi, Kim D. Pruitt and Tatiana Tatusova

Stand Genomic Sci 2011; 5(1):168-193

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