Standards in Genomic Sciences

Volume 6, Issue 1

Short Genome Reports

Complete genome sequence of Paenibacillus sp. strain JDR-2

Virginia Chow, Guang Nong, Franz J. St. John, John D. Rice, Ellen Dickstein, Olga Chertkov, David Bruce, Chris Detter, Thomas Brettin, James Han, Tanja Woyke, Sam Pitluck, Matt Nolan, Amrita Pati, Joel Martin, Alex Copeland, Miriam L. Land, Lynne Goodwin, Jeffrey B. Jones, Lonnie O. Ingram, Keelnathan T. Shanmugam and James F. Preston

Stand Genomic Sci 2012; 6(1):1-10

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Short Genome Reports

Short Genome Reports

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1T) from a deep-sea hydrothermal vent chimney

Alex Copeland, Wei Gu, Montri Yasawong, Alla Lapidus, Susan Lucas, Shweta Deshpande, Ioanna Pagani, Roxanne Tapia, Jan-Fang Cheng, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Chongle Pan, Evelyne-Marie Brambilla, Manfred Rohde, Brian J. Tindall, Johannes Sikorski, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Tanja Woyke

Stand Genomic Sci 2012; 6(1):21-30

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Short Genome Reports

Complete genome sequence of Halopiger xanaduensis type strain (SH-6T)

Iain Anderson, Brian J. Tindall, Manfred Rohde, Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Lin Peters, Amrita Pati, Natalia Mikhailova, Ioanna Pagani, Hazuki Teshima, Cliff Han, Roxanne Tapia, Miriam Land, Tanja Woyke, Hans-Peter Klenk, Nikos Kyrpides and Natalia Ivanova

Stand Genomic Sci 2012; 6(1):31-42

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Short Genome Reports

Draft genome sequence of Arthrospira platensis C1 (PCC9438)

Supapon Cheevadhanarak, Kalyanee Paithoonrangsarid, Peerada Prommeenate, Warunee Kaewngam, Apiluck Musigkain, Somvong Tragoonrung, Satoshi Tabata, Takakazu Kaneko, Jeerayut Chaijaruwanich, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Juntima Chanprasert, Sissades Tongsima, Kanthida Kusonmano, Wattana Jeamton, Sudarat Dulsawat, Amornpan Klanchui, Tayvich Vorapreeda, Vasunun Chumchua, Chiraphan Khannapho, Chinae Thammarongtham, Vethachai Plengvidhya, Sanjukta Subudhi, Apiradee Hongsthong, Marasri Ruengjitchatchawalya, Asawin Meechai, Jittisak Senachak and Morakot Tanticharoen

Stand Genomic Sci 2012; 6(1):43-53

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Short Genome Reports

Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9

Saraswoti Neupane, Nils Högberg, Sadhna Alström, Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Lin Peters, Galina Ovchinnikova, Megan Lu, Cliff Han, John C. Detter, Roxanne Tapia, Anne Fiebig, Miriam Land, Loren Hauser, Nikos C. Kyrpides, Natalia Ivanova, Ioanna Pagani, Hans-Peter Klenk, Tanja Woyke and Roger D. Finlay

Stand Genomic Sci 2012; 6(1):54-62

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Short Genome Reports

Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1T).

Patricia Lucas-Elío, Lynne Goodwin, Tanja Woyke, Sam Pitluck, Matt Nolan, Nikos C. Kyrpides, Janine C. Detter, Alex Copeland, Hazuki Teshima, David Bruce, Chris Detter, Roxanne Tapia, Shunsheng Han, Miriam L. Land, Natalia Ivanova, Natalia Mikhailova, Andrew W.B. Johnston and Antonio Sanchez-Amat

Stand Genomic Sci 2012; 6(1):63-73

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Short Genome Reports

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)

Linda Meincke, Alex Copeland, Alla Lapidus, Susan Lucas, Kerrie W. Berry, Tijana Glavina Del Rio, Nancy Hammon, Eileen Dalin, Hope Tice, Sam Pitluck, Paul Richardson, David Bruce, Lynne Goodwin, Cliff Han, Roxanne Tapia, John C. Detter, Jeremy Schmutz, Thomas Brettin, Frank Larimer, Miriam Land, Loren Hauser, Nikos C. Kyrpides, Natalia Ivanova, Markus Göker, Tanja Woyke, Qinglong L. Wu, Matthias Pöckl, Martin W. Hahn and Hans-Peter Klenk

Stand Genomic Sci 2012; 6(1):74-83

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Short Genome Reports

Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium

Jimmy H.W. Saw, Anton Yuryev, Masaomi Kanbe, Shaobin Hou, Aaron G. Young, Shin-Ichi Aizawa and Maqsudul Alam

Stand Genomic Sci 2012; 6(1):84-93

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Short Genome Reports

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T)

Cliff Han, Oleg Kotsyurbenko, Olga Chertkov, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-juan Chang, Cynthia D. Jeffries, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and John C. Detter

Stand Genomic Sci 2012; 6(1):94-103

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Short Genome Reports

Complete Genome Sequence of Clostridium clariflavum DSM 19732

Javier A. Izquierdo, Lynne Goodwin, Karen W. Davenport, Hazuki Teshima, David Bruce, Chris Detter, Roxanne Tapia, Shunsheng Han, Miriam Land, Loren Hauser, Cynthia D. Jeffries, James Han, Sam Pitluck, Matt Nolan, Amy Chen, Marcel Huntemann, Konstantinos Mavromatis, Natalia Mikhailova, Konstantinos Liolios, Tanja Woyke and Lee R. Lynd

Stand Genomic Sci 2012; 6(1):104-115

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Short Genome Reports

Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov.

Jean-Christophe Lagier, Khalid El Karkouri, Thi-Tien Nguyen, Fabrice Armougom, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2012; 6(1):116-125

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Announcement

White Papers

Conceptualizing a Genomics Software Institute (GSI)

Jack A. Gilbert, Charlie Catlett, Narayan Desai, Rob Knight, Owen White, Robert Robbins, Rajesh Sankaran, Susanna-Assunta Sansone, Dawn Field and Folker Meyer

Stand Genomic Sci 2012; 6(1):136-144

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