Standards in Genomic Sciences

Volume 6, Issue 2

Short Genome Reports

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

Alex Copeland, Xiaojing Zhang, Monica Misra, Alla Lapidus, Matt Nolan, Susan Lucas, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Chongle Pan, Cynthia D. Jeffries, John C. Detter, Evelyne-Marie Brambilla, Manfred Rohde, Olivier D. Ngatchou Djao, Markus Göker, Johannes Sikorski, Brian J. Tindall, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Konstantinos Mavromatis

Stand Genomic Sci 2012; 6(2):145-154

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Short Genome Reports

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

Iain Anderson, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Cynthia D. Jeffries, Yun-juan Chang, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2012; 6(2):155-164

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Short Genome Reports

Complete genome sequence of Serratia plymuthica strain AS12

Saraswoti Neupane, Roger D. Finlay, Sadhna Alström, Lynne Goodwin, Nikos C. Kyrpides, Susan Lucas, Alla Lapidus, David Bruce, Sam Pitluck, Lin Peters, Galina Ovchinnikova, Olga Chertkov, James Han, Cliff Han, Roxanne Tapia, John C. Detter, Miriam Land, Loren Hauser, Jan-Fang Cheng, Natalia Ivanova, Ioanna Pagani, Hans-Peter Klenk, Tanja Woyke and Nils Högberg

Stand Genomic Sci 2012; 6(2):165-173

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Short Genome Reports

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)

Iain Anderson, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk and Nikos C. Kyrpides

Stand Genomic Sci 2012; 6(2):174-184

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Short Genome Reports

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1T)

Marcel Huntemann, Hazuki Teshima, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Chongle Pan, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Tanja Woyke

Stand Genomic Sci 2012; 6(2):185-193

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Short Genome Reports

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta

Birte Abt, Cliff Han, Carmen Scheuner, Megan Lu, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Sabine Gronow, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and John C. Detter

Stand Genomic Sci 2012; 6(2):194-209

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Short Genome Reports

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)

Konstantinos Mavromatis, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, David Bruce, Lynne A. Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Tanja Woyke

Stand Genomic Sci 2012; 6(2):210-219

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Short Genome Reports

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)

Hans-Peter Klenk, Brittany Held, Susan Lucas, Alla Lapidus, Alex Copeland, Nancy Hammon, Sam Pitluck, Lynne A. Goodwin, Cliff Han, Roxanne Tapia, Evelyne-Marie Brambilla, Gabriele Pötter, Miriam Land, Natalia Ivanova, Manfred Rohde, Markus Göker, John C. Detter, Nikos C. Kyrpides and Tanja Woyke

Stand Genomic Sci 2012; 6(2):220-229

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Short Genome Reports

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)

Markus Göker, Elisabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Yun-juan Chang, Cynthia D. Jeffries, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2012; 6(2):230-239

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Short Genome Reports

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRPT)

Alex Copeland, Ahmet Zeytun, Montri Yassawong, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Mavromatis, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Cynthia D. Jeffries, Evelyne-Marie Brambilla, Manfred Rohde, Johannes Sikorski, Rüdiger Pukall, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Alla Lapidus

Stand Genomic Sci 2012; 6(2):240-250

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Short Genome Reports

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9T) and comparison to Dehalococcoides strains

Shivakumara Siddaramappa, Jean F. Challacombe, Susana F. Delano, Lance D. Green, Hajnalka Daligault, David Bruce, Chris Detter, Roxanne Tapia, Shunsheng Han, Lynne Goodwin, James Han, Tanja Woyke, Sam Pitluck, Len Pennacchio, Matt Nolan, Miriam Land, Yun-Juan Chang, Nikos C. Kyrpides, Galina Ovchinnikova, Loren Hauser, Alla Lapidus, Jun Yan, Kimberly S. Bowman, Milton S. da Costa, Fred A. Rainey and William M. Moe

Stand Genomic Sci 2012; 6(2):251-264

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Short Genome Reports

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)

Hans-Peter Klenk, Megan Lu, Susan Lucas, Alla Lapidus, Alex Copeland, Sam Pitluck, Lynne A. Goodwin, Cliff Han, Roxanne Tapia, Evelyne-Marie Brambilla, Gabriele Pötter, Miriam Land, Natalia Ivanova, Manfred Rohde, Markus Göker, John C. Detter, Wen-Jun Li, Nikos C. Kyrpides and Tanja Woyke

Stand Genomic Sci 2012; 6(2):265-275

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Community Dialog

Report of the 13th Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.

Jack A. Gilbert, Yiming Bao, Hui Wang, Susanna-Assunta Sansone, Scott C. Edmunds, Norman Morrison, Folker Meyer, Lynn M. Schriml, Neil Davies, Peter Sterk, Jared Wilkening, George M. Garrity, Dawn Field, Robert Robbins, Daniel P. Smith, Ilene Mizrachi and Corrie Moreau

Stand Genomic Sci 2012; 6(2):276-286

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Announcements

Genome sequences published outside of Standards in Genomic Sciences, March - April 2012

Oranmiyan W. Nelson and George M. Garrity

Stand Genomic Sci 2012; 6(2):287-292

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