Standards in Genomic Sciences

Volume 6, Issue 3

Short Genome Reports

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT)

Iain Anderson, Olga Chertkov, Amy Chen, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Krishna Palaniappan, Miriam Land, Chongle Pan, Manfred Rohde, Rüdiger Pukall, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Konstantinos Mavromatis

Stand Genomic Sci 2012; 6(3):293-303

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Short Genome Reports

Genome sequence and description of Alistipes senegalensis sp. nov.

Ajay Kumar Mishra, Gregory Gimenez, Jean-Christophe Lagier, Catherine Robert, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2012; 6(3):304-314

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Short Genome Reports

Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov.

Jean-Christophe Lagier, Fabrice Armougom, Ajay Kumar Mishra, Thi-Tien Nguyen, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2012; 6(3):315-324

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Short Genome Reports

Complete genome sequence of Thauera aminoaromatica strain MZ1T

Ke Jiang, John Sanseverino, Archana Chauhan, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina Del Rio, Eileen Dalin, Hope Tice, David Bruce, Lynne Goodwin, Sam Pitluck, David Sims, Thomas Brettin, John C. Detter, Cliff Han, Y.J. Chang, Frank Larimer, Miriam Land, Loren Hauser, Nikos C. Kyrpides, Natalia Mikhailova, Scott Moser, Patricia Jegier, Dan Close, Jennifer M. DeBruyn, Ying Wang, Alice C. Layton, Michael S. Allen and Gary S. Sayler

Stand Genomic Sci 2012; 6(3):325-335

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Short Genome Reports

Complete genome sequence of Pyrobaculum oguniense

David L. Bernick, Kevin Karplus, Lauren M. Lui, Joanna K.C. Coker, Julie N. Murphy, Patricia P. Chan, Aaron E. Cozen and Todd M. Lowe

Stand Genomic Sci 2012; 6(3):336-345

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Short Genome Reports

Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov.

Sahare Kokcha, Ajay Kumar Mishra, Jean-Christophe Lagier, Matthieu Million, Quentin Leroy, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2012; 6(3):346-355

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Short Genome Reports

Non-contiguous finished genome sequence and description of Anaerococcus vaginalis

Perrine Hugon, Ajay Kumar Mishra, Catherine Robert, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2012; 6(3):356-365

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Short Genome Reports

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park

David A. Mead, Susan Lucas, Alex Copeland, Alla Lapidus, Jan-Feng Cheng, David C. Bruce, Lynne A. Goodwin, Sam Pitluck, Olga Chertkov, Xiaojing Zhang, John C. Detter, Cliff S. Han, Roxanne Tapia, Miriam Land, Loren J. Hauser, Yun-juan Chang, Nikos C. Kyrpides, Natalia N. Ivanova, Galina Ovchinnikova, Tanja Woyke, Catherine Brumm, Rebecca Hochstein, Thomas Schoenfeld and Phillip Brumm

Stand Genomic Sci 2012; 6(3):366-385

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Short Genome Reports

Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov.

Ajay Kumar Mishra, Jean-Christophe Lagier, Catherine Robert, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2012; 6(3):386-395

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Announcement

Genome sequences published outside of Standards in Genomic Sciences, May-June 2012

Oranmiyan W. Nelson and George M. Garrity

Stand Genomic Sci 2012; 6(3):396-405

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Short Genome Reports

Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (=NBRC 101213 T)

Yoko Katano, Shun Fujinami, Akatsuki Kawakoshi, Hidekazu Nakazawa, Syoko Oji, Takao Iino, Akio Oguchi, Akiho Ankai, Shigehiro Fukui, Yasuyuki Terui, Sachi Kamata, Takeshi Harada, Satoshi Tanikawa, Ken-ichiro Suzuki and Nobuyuki Fujita

Stand Genomic Sci 2012; 6(3):406-414

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Short Genome Reports

Complete genome sequence of bacteriophage VvAW1, which infects Vibrio vulnificus

Olivia D. Nigro, Alexander I. Culley and Grieg F. Steward

Stand Genomic Sci 2012; 6(3):415-426

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Standard Operating Procedures

VIROME: a standard operating procedure for analysis of viral metagenome sequences

K. Eric Wommack, Jaysheel Bhavsar, Shawn W. Polson, Jing Chen, Michael Dumas, Sharath Srinivasiah, Megan Furman, Sanchita Jamindar and Daniel J. Nasko

Stand Genomic Sci 2012; 6(3):427-439

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Short Genome Reports

The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness

Konstantinos Liolios, Lynn Schriml, Lynette Hirschman, Ioanna Pagani, Bahador Nosrat, Peter Sterk, Owen White, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris Taylor, Nikos C. Kyrpides and Dawn Field

Stand Genomic Sci 2012; 6(3):444-453

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