Standards in Genomic Sciences

Volume 8, Issue 2

Short Genome Reports

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift

Konstantinos Liolos, Birte Abt, Carmen Scheuner, Hazuki Teshima, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Manfred Rohde, Brian J. Tindall, John C. Detter, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Tanja Woyke, Hans-Peter Klenk and Nikos C. Kyrpides

Stand Genomic Sci 2013; 8(2):165-176

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Short Genome Reports

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T)

Marcel Huntemann, Erko Stackebrandt, Brittany Held, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Manfred Rohde, Sabine Gronow, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Tanja Woyke, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk and Alla Lapidus

Stand Genomic Sci 2013; 8(2):177-187

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Short Genome Reports

Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks

Ulisses de Pádua Pereira, Anderson Rodrigues dos Santos, Syed Shah Hassan, Flávia Figueira Aburjaile, Siomar de Castro Soares, Rommel Thiago Jucá Ramos, Adriana Ribeiro Carneiro, Luís Carlos Guimarães, Sintia Silva de Almeida, Carlos Augusto Almeida Diniz, Maria Silvanira Barbosa, Pablo Gomes de Sá, Amjad Ali, Syeda Marriam Bakhtiar, Fernanda Alves Dorella, Adhemar Zerlotini, Flávio Marcos Gomes Araújo, Laura Rabelo Leite, Guilherme Oliveira, Anderson Miyoshi, Artur Silva, Vasco Azevedo and Henrique César Pereira Figueiredo

Stand Genomic Sci 2013; 8(2):188-197

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Short Genome Reports

Non-contiguous finished genome sequence and description of Salmonella enterica subsp. houtenae str. RKS3027

Songling Zhu, Hong-Liang Wang, Chunxiao Wang, Le Tang, Xiaoyu Wang, Kai-Jiang Yu and Shu-Lin Liu

Stand Genomic Sci 2013; 8(2):198-205

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Short Genome Reports

Complete genome sequence of Halorhodospira halophila SL1

Jean F. Challacombe, Sophia Majid, Ratnakar Deole, Thomas S. Brettin, David Bruce, Susana F. Delano, John C. Detter, Cheryl D. Gleasner, Cliff S. Han, Monica Misra, Krista G. Reitenga, Natalia Mikhailova, Tanja Woyke, Sam Pitluck, Matt Nolan, Miriam L. Land, Elizabeth Saunders, Roxanne Tapia, Alla Lapidus, Natalia Ivanova and Wouter D. Hoff

Stand Genomic Sci 2013; 8(2):206-214

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Short Genome Reports

The Complete Genome Sequence of Methanobrevibacter sp. AbM4

S. C. Leahy, W. J. Kelly, D. Li, Y. Li, E. Altermann, S. C. Lambie, F. Cox and G. T. Attwood

Stand Genomic Sci 2013; 8(2):215-227

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Short Genome Reports

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT), and emendation of the species Turneriella parva

Erko Stackebrandt, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Chongle Pan, Manfred Rohde, Sabine Gronow, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Tanja Woyke, Nikos C. Kyrpides and Hans-Peter Klenk

Stand Genomic Sci 2013; 8(2):228-238

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Short Genome Reports

Permanent draft genome sequence of Comamonas testosteroni KF-1

Michael Weiss, Anna I. Kesberg, Kurt M. LaButti, Sam Pitluck, David Bruce, Loren Hauser, Alex Copeland, Tanja Woyke, Stephen Lowry, Susan Lucas, Miriam Land, Lynne Goodwin, Staffan Kjelleberg, Alasdair M. Cook, Matthias Buhmann, Torsten Thomas and David Schleheck

Stand Genomic Sci 2013; 8(2):239-254

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Short Genome Reports

Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain CrmT (= DSM 23852T)

Dong-Wook Hyun, Tae Woong Whon, Yong-Joon Cho, Jongsik Chun, Min-Soo Kim, Mi-Ja Jung, Na-Ri Shin, Joon-Yong Kim, Pil Soo Kim, Ji-Hyun Yun, Jina Lee, Sei Joon Oh and Jin-Woo Bae

Stand Genomic Sci 2013; 8(2):255-263

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Short Genome Reports

Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov.

Dhamodharan Ramasamy, Jean-Christophe Lagier, Aurore Gorlas, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 8(2):264-278

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Short Genome Reports

Non-contiguous finished genome sequence and description of Bartonella senegalensis sp. nov.

Oleg Mediannikov, Khalid El Karkouri, Georges Diatta, Catherine Robert, Pierre-Edouard Fournier and Didier Raoult

Stand Genomic Sci 2013; 8(2):279-289

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Short Genome Reports

Non contiguous-finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the Family Coriobacteriaceae

Ajay Kumar Mishra, Perrine Hugon, Jean-Christophe Lagier, Thi-Tien Nguyen, Carine Couderc, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 8(2):290-305

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Short Genome Reports

Non-contiguous genome sequence of Mycobacterium simiae strain DSM 44165T

Mohamed Sassi, Catherine Robert, Didier Raoult and Michel Drancourt

Stand Genomic Sci 2013; 8(2):306-317

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Short Genome Reports

Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae

Ajay Kumar Mishra, Jean-Christophe Lagier, Catherine Robert, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 8(2):318-335

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Short Genome Reports

Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the Family Erysipelotrichaceae

Dhamodharan Ramasamy, Jean-Christophe Lagier, Thi Tien Nguyen, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 8(2):336-351

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Short Genome Reports

Clarifying Concepts and Terms in Biodiversity Informatics

John Deck, Katharine Barker, Reed Beaman, Pier Luigi Buttigieg, Gabriele Dröge, Robert Guralnick, Chuck Miller, Éamonn Ó Tuama, Zack Murrell, Cynthia Parr, Bob Robbins, Dmitry Schigel, Brian Stucky, Ramona Walls, John Wieczorek, Norman Morrison and John Wooley

Stand Genomic Sci 2013; 8(2):352-359

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Research Article