Standards in Genomic Sciences

Volume 8, Issue 3

Short Genome Reports

Complete genome sequence of Dehalobacter restrictus PER-K23T

Thomas Kruse, Julien Maillard, Lynne Goodwin, Tanja Woyke, Hazuki Teshima, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Marcel Huntemann, Chia-Lin Wei, James Han, Amy Chen, Nikos Kyrpides, Ernest Szeto, Victor Markowitz, Natalia Ivanova, Ioanna Pagani, Amrita Pati, Sam Pitluck, Matt Nolan, Christof Holliger and Hauke Smidt

Stand Genomic Sci 2013; 8(3):375-388

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Short Genome Reports

Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements

Thomas Riedel, Hazuki Teshima, Jörn Petersen, Anne Fiebig, Karen Davenport, Hajnalka Daligault, Tracy Erkkila, Wei Gu, Christine Munk, Yan Xu, Amy Chen, Amrita Pati, Natalia Ivanova, Lynne A. Goodwin, Patrick Chain, John C. Detter, Manfred Rohde, Sabine Gronow, Nikos C. Kyrpides, Tanja Woyke, Markus Göker, Thorsten Brinkhoff and Hans-Peter Klenk

Stand Genomic Sci 2013; 8(3):389-402

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Short Genome Reports

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564T), a surface-associated member of the marine Roseobacter clade

Paul G. Beyersmann, Olga Chertkov, Jörn Petersen, Anne Fiebig, Amy Chen, Amrita Pati, Natalia Ivanova, Alla Lapidus, Lynne A. Goodwin, Patrick Chain, John C. Detter, Manfred Rohde, Sabine Gronow, Nikos C. Kyrpides, Tanja Woyke, Meinhard Simon, Markus Göker, Hans-Peter Klenk and Thorsten Brinkhoff

Stand Genomic Sci 2013; 8(3):403-419

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Short Genome Reports

Complete genome sequence of Ilumatobacter coccineum YM16-304T

Shun Fujinami, Hiromi Takarada, Hiroaki Kasai, Mitsuo Sekine, Seiha Omata, Takeshi Harada, Rieko Fukai, Akira Hosoyama, Hiroshi Horikawa, Yumiko Kato, Hidekazu Nakazawa and Nobuyuki Fujita

Stand Genomic Sci 2013; 8(3):430-440

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Short Genome Reports

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

Saraswoti Neupane, Lynne A. Goodwin, Nils Högberg, Nikos C. Kyrpides, Sadhna Alström, David Bruce, Beverly Quintana, Christine Munk, Hajnalka Daligault, Hazuki Teshima, Karen Davenport, Krista Reitenga, Lance Green, Patrick Chain, Tracy Erkkila, Wei Gu, Xiaojing Zhang, Yan Xu, Yulia Kunde, Olga Chertkov, James Han, Cliff Han, John C. Detter, Natalia Ivanova, Amrita Pati, Amy Chen, Ernest Szeto, Kostas Mavromatis, Marcel Huntemann, Matt Nolan, Sam Pitluck, Shweta Deshpande, Victor Markowitz, Ioanna Pagani, Hans-Peter Klenk, Tanja Woyke and Roger D. Finlay

Stand Genomic Sci 2013; 8(3):441-449

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Short Genome Reports

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566T

Heike M. Freese, Hajnalka Dalingault, Jörn Petersen, Silke Pradella, Karen Davenport, Hazuki Teshima, Amy Chen, Amrita Pati, Natalia Ivanova, Lynne A. Goodwin, Patrick Chain, John C. Detter, Manfred Rohde, Sabine Gronow, Nikos C. Kyrpides, Tanja Woyke, Thorsten Brinkhoff, Markus Göker, Jörg Overmann and Hans-Peter Klenk

Stand Genomic Sci 2013; 8(3):450-464

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Short Genome Reports

Non-contiguous finished genome sequence and description of Bacillus massilioanorexius sp. nov.

Ajay Kumar Mishra, Anne Pfleiderer, Jean-Christophe Lagier, Catherine Robert, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 8(3):465-479

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Short Genome Reports

Genome sequence of the reddish-pigmented Rubellimicrobium thermophilum type strain (DSM 16684T), a member of the Roseobacter clade

Anne Fiebig, Thomas Riedel, Sabine Gronow, Jörn Petersen, Hans-Peter Klenk and Markus Göker

Stand Genomic Sci 2013; 8(3):480-490

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Short Genome Reports

Draft Genome Sequence of Amphibacillus jilinensis Y1T, a Facultatively Anaerobic, Alkaliphilic and Halotolerant Bacterium

Hong Cheng, Ming-Xu Fang, Xia-Wei Jiang, Min Wu, Xu-Fen Zhu, Gang Zheng and Zhi-Jian Yang

Stand Genomic Sci 2013; 8(3):491-499

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Short Genome Reports

Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI

Perrine Hugon, Dhamodharan Ramasamy, Catherine Robert, Carine Couderc, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 8(3):500-515

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Short Genome Reports

Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T)

Lena Schaffert, Andreas Albersmeier, Hanna Bednarz, Karsten Niehaus, Jörn Kalinowski and Christian Rückert

Stand Genomic Sci 2013; 8(3):516-524

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Short Genome Reports

Non-contiguous finished genome sequence and description of Megasphaera massiliensis sp. nov.

Roshan Padmanabhan, Jean-Christophe Lagier, Nicole Prisca Makaya Dangui, Caroline Michelle, Carine Couderc, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 8(3):525-538

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Short Genome Reports

Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177

Jordy P. M. Coolen, Andreas Sjödin, Boulos Maraha, Gerard F. Hajer, Mats Forsman, Ellen Verspui, Hendrina M.E. Frenay, Daan W. Notermans, Maaike C. de Vries, Frans A.G. Reubsaet, Armand Paauw and Guus Roeselers

Stand Genomic Sci 2013; 8(3):539-547

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Short Genome Reports

Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium

Isabelle Pagnier, Olivier Croce, Catherine Robert, Didier Raoult and Bernard La Scola

Stand Genomic Sci 2013; 8(3):548-560

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Community Dialog

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013

George M. Garrity, Jill Banfield, Jonathan Eisen, Niels van der Lelie, Trina McMahon, Doug Rusch, Edward DeLong, Mary Ann Moran, Cameron Currie, Jed Furhman, Steve Hallam, Phil Hugenholtz, Nancy Moran, Karen Nelson, Richard Roberts and Ramunas Stepanauskas

Stand Genomic Sci 2013; 8(3):561-570

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Short Genome Reports

The Hospital Microbiome Project: Meeting report for the 2nd Hospital Microbiome Project, Chicago, USA, January 15 th, 2013

Benjamin D. Shogan, Daniel P. Smith, Aaron I. Packman, Scott T. Kelley, Emily M Landon, Seema Bhangar, Gary J. Vora, Rachael M. Jones, Kevin Keegan, Brent Stephens, Tiffanie Ramos, Benjamin C. Kirkup, Hal Levin, Mariana Rosenthal, Betsy Foxman, Eugene B. Chang, Jeffrey Siegel, Sarah Cobey, Gary An, John C. Alverdy, Paula J. Olsiewski, Mark O. Martin, Rachel Marrs, Mark Hernandez, Scott Christley, Michael Morowitz, Stephen Weber and Jack Gilbert

Stand Genomic Sci 2013; 8(3):571-579

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