Standards in Genomic Sciences

Volume 9, Issue 2

Short Genome Reports

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

Wayne Reeve, Elizabeth Drew, Ross Ballard, Vanessa Melino, Rui Tian, Sofie De Meyer, Lambert Brau, Mohamed Ninawi, Hazuki Teshima, Lynne Goodwin, Patrick Chain, Konstantinos Liolios, Amrita Pati, Konstantinos Mavromatis, Natalia Ivanova, Victor Markowitz, Tanja Woyke and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):220-231

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.

Wayne Reeve, Elizabeth Drew, Ross Ballard, Vanessa Melino, Rui Tian, Sofie De Meyer, Lambert Brau, Mohamed Ninawi, Hajnalka Daligault, Karen Davenport, Tracy Erkkila, Lynne Goodwin, Wei Gu, Christine Munk, Hazuki Teshima, Yan Xu, Patrick Chain and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):232-242

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

Wayne Reeve, Rui Tian, Sofie De Meyer, Vanessa Melino, Jason Terpolilli, Julie Ardley, Ravi Tiwari, John Howieson, Ronald Yates, Graham OʼHara, Mohamed Ninawi, Hazuki Teshima, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Chia-Lin Wei, Marcel Huntemann, James Han, I-Min Chen, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Galina Ovchinnikova, Ioanna Pagani, Amrita Pati, Lynne Goodwin, Sam Pitluck, Tanja Woyke and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):243-253

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471

Wayne Reeve, Sofie De Meyer, Jason Terpolilli, Vanessa Melino, Julie Ardley, Rui Tian, Ravi Tiwari, John Howieson, Ronald Yates, Graham OʼHara, Mohamed Ninawi, Megan Lu, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Chia-Lin Wei, Marcel Huntemann, James Han, I-Min Chen, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Ioanna Pagani, Amrita Pati, Lynne Goodwin, Tanja Woyke and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):254-263

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597

Wayne Reeve, Jason Terpolilli, Vanessa Melino, Julie Ardley, Rui Tian, Sofie De Meyer, Ravi Tiwari, Ronald Yates, Graham OʼHara, John Howieson, Mohamed Ninawi, Brittany Held, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Chia-Lin Wei, Marcel Huntemann, James Han, I-Min Chen, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Galina Ovchinnikova, Ioanna Pagani, Amrita Pati, Lynne Goodwin, Tanja Woyke and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):264-272

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417

Wayne Reeve, Jason Terpolilli, Vanessa Melino, Julie Ardley, Rui Tian, Sofie De Meyer, Ravi Tiwari, Ronald Yates, Graham OʼHara, John Howieson, Mohamed Ninawi, Hazuki Teshima, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Chia-Lin Wei, Marcel Huntemann, James Han, I-Min Chen, Konstantinos Mavrommatis, Victor Markowitz, Natalia Ivanova, Galina Ovchinnikova, Ioanna Pagani, Amrita Pati, Lynne Goodwin, Lin Peters, Tanja Woyke and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):273-282

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of the Trifolium rueppellianum-nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

Wayne Reeve, Vanessa Melino, Julie Ardley, Rui Tian, Sofie De Meyer, Jason Terpolilli, Ravi Tiwari, Ronald Yates, Graham OʼHara, John Howieson, Mohamed Ninawi, Brittany Held, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Chia-Lin Wei, Marcel Huntemann, James Han, I-Min Chen, Konstantinos Mavromatis, Victor Markowitz, Ernest Szeto, Natalia Ivanova, Natalia Mikhailova, Ioanna Pagani, Amrita Pati, Lynne Goodwin, Tanja Woyke and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):283-293

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075T

Wayne Reeve, Kemanthi Nandasena, Ron Yates, Ravi Tiwari, Graham OʼHara, Mohamed Ninawi, Olga Chertkov, Lynne Goodwin, David Bruce, Chris Detter, Roxanne Tapia, Shunseng Han, Tanja Woyke, Sam Pitluck, Matt Nolan, Miriam Land, Alex Copeland, Konstantinos Liolios, Amrita Pati, Konstantinos Mavromatis, Victor Markowitz, Nikos Kyrpides, Natalia Ivanova, Lynne Goodwin, Uma Meenakshi and John Howieson

Stand Genomic Sci 2013; 9(2):294-303

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert

Nisha Tak, Hukam S Gehlot, Muskan Kaushik, Sunil Choudhary, Ravi Tiwari, Rui Tian, Yvette Hill, Lambert Bräu, Lynne Goodwin, James Han, Konstantinos Liolios, Marcel Huntemann, Krishna Palaniappan, Amrita Pati, Konstantinos Mavromatis, Natalia Ivanova, Victor Markowitz, Tanja Woyke, Nikos Kyrpides and Wayne Reeve

Stand Genomic Sci 2013; 9(2):304-314

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17

Jason Terpolilli, Yvette Hill, Rui Tian, John Howieson, Lambert Bräu, Lynne Goodwin, James Han, Konstantinos Liolios, Marcel Huntemann, Amrita Pati, Tanja Woyke, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides and Wayne Reeve

Stand Genomic Sci 2013; 9(2):315-324

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58

Marco Galardini, Marco Bazzicalupo, Emanuele Biondi, Eveline Brambilla, Matteo Brilli, David Bruce, Patrick Chain, Amy Chen, Hajnalka Daligault, Karen Walston Davenport, Shweta Deshpande, John C. Detter, Lynne A. Goodwin, Cliff Han, James Han, Marcel Huntemann, Natalia Ivanova, Hans-Peter Klenk, Nikos C. Kyrpides, Victor Markowitz, Kostas Mavrommatis, Stefano Mocali, Matt Nolan, Ioanna Pagani, Amrita Pati, Francesco Pini, Sam Pitluck, Giulia Spini, Ernest Szeto, Hazuki Teshima, Tanja Woyke and Alessio Mengoni

Stand Genomic Sci 2013; 9(2):325-333

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

Marco Dogs, Sonja Voget, Hazuki Teshima, Jörn Petersen, Karen Davenport, Hajnalka Dalingault, Amy Chen, Amrita Pati, Natalia Ivanova, Lynne A. Goodwin, Patrick Chain, John C. Detter, Sonja Standfest, Manfred Rohde, Sabine Gronow, Nikos C. Kyrpides, Tanja Woyke, Meinhard Simon, Hans-Peter Klenk, Markus Göker and Thorsten Brinkhoff

Stand Genomic Sci 2013; 9(2):334-350

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Non-contiguous finished genome sequence of Phocaeicola abscessus type strain 7401987T

Véronique Roux, Catherine Robert and Didier Raoult

Stand Genomic Sci 2013; 9(2):351-358

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production

Namita Khanna, Ananta Kumar Ghosh, Marcel Huntemann, Shweta Deshpande, James Han, Amy Chen, Nikos Kyrpides, Kostas Mavrommatis, Ernest Szeto, Victor Markowitz, Natalia Ivanova, Ioanna Pagani, Amrita Pati, Sam Pitluck, Matt Nolan, Tanja Woyke, Hazuki Teshima, Olga Chertkov, Hajnalka Daligault, Karen Davenport, Wei Gu, Christine Munk, Xiaojing Zhang, David Bruce, Chris Detter, Yan Xu, Beverly Quintana, Krista Reitenga, Yulia Kunde, Lance Green, Tracy Erkkila, Cliff Han, Evelyne-Marie Brambilla, Elke Lang, Hans-Peter Klenk, Lynne Goodwin, Patrick Chain and Debabrata Das

Stand Genomic Sci 2013; 9(2):359-369

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov.

Véronique Roux, Matthieu Million, Catherine Robert, Alix Magne and Didier Raoult

Stand Genomic Sci 2013; 9(2):370-384

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of the Lebeckia ambigua-nodulating Burkholderia sprentiae strain WSM5005T

Wayne Reeve, Sofie De Meyer, Jason Terpolilli, Vanessa Melino, Julie Ardley, Tian Rui, Ravi Tiwari, John Howieson, Ron Yates, Graham OʼHara, Megan Lu, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Chia-Lin Wei, Marcel Huntemann, James Han, I-Min Chen, Konstantinos Mavromatis, Victor Markowitz, Ernest Szeto, Natalia Ivanova, Natalia Mikhailova, Galina Ovchinnikova, Ioanna Pagani, Amrita Pati, Lynne Goodwin, Lin Peters, Sam Pitluck, Tanja Woyke and Nikos Kyrpides

Stand Genomic Sci 2013; 9(2):385-394

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Non-contiguous finished genome sequence and description of Holdemania massiliensis sp. nov.

Ajay Kumar Mishra, Jean-Christophe Lagier, Anne Pfleiderer, Thi Thien Nguyen, Aurelia Caputo, Didier Raoult and Pierre-Edouard Fournier

Stand Genomic Sci 2013; 9(2):395-409

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)

Wayne Reeve, Kemanthi Nandasena, Ron Yates, Ravi Tiwari, Graham OʼHara, Mohamed Ninawi, Wei Gu, Lynne Goodwin, Chris Detter, Roxanne Tapia, Cliff Han, Alex Copeland, Konstantinos Liolios, Amy Chen, Victor Markowitz, Amrita Pati, Konstantinos Mavromatis, Tanja Woyke, Nikos Kyrpides, Natalia Ivanova and John Howieson

Stand Genomic Sci 2013; 9(2):410-419

PubMedPubMed CentralView ArticleDownload PDF

Short Genome Reports

Genome sequence of Ensifer medicae strain WSM1369; an effective microsymbiont of the annual legume Medicago sphaerocarpos

Jason Terpolilli, Giovanni Garau, Yvette Hill, Rui Tian, John Howieson, Lambert Bräu, Lynne Goodwin, James Han, Konstantinos Liolios, Marcel Huntemann, Amrita Pati, Tanja Woyke, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides and Wayne Reeve

Stand Genomic Sci 2013; 9(2):420-430

PubMedPubMed CentralView ArticleDownload PDF

Research Articles

Veillonella, Firmicutes: Microbes disguised as Gram negatives

Tammi Vesth, Aslı Ozen, Sandra C. Andersen, Rolf Sommer Kaas, Oksana Lukjancenko, Jon Bohlin, Intawat Nookaew, Trudy M. Wassenaar and David W. Ussery

Stand Genomic Sci 2013; 9(2):431-448

PubMedPubMed CentralView ArticleDownload PDF