Vol 1, No 1 (2009)

Standards in Genomic Sciences

Table of Contents

Editorial/Commentary

Standards in Genomic Sciences PDF HTML
George M. Garrity, Dawn Field, Nikos C. Kyrpides 1-2

Genome Report

Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T) PDF HTML
Alla Lapidus, Rüdiger Pukall, Kurt LaButti, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Patrik D'haeseleer, Patrick Chain, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk 3-11
Complete genome sequence of Kytococcus sedentarius type strain (strain 541T) PDF HTML
David Sims, Thomas Brettin, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Galina Ovchinnikova, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Patrik D'haeseleer, Patrick Chain, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Susanne Schneider, Markus Göker, Rüdiger Pukall, Nikos C. Kyrpides, Hans-Peter Klenk 12-20
Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T) PDF HTML
Miriam Land, Rüdiger Pukall, Birte Abt, Markus Göker, Manfred Rohde, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Elizabeth Saunders, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus 21-28
Complete genome sequence of Desulfomicrobium baculatum type strain (XT) PDF HTML
Alex Copeland, Stefan Spring, Markus Göker, Susanne Schneider, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Linda Meincke, David Sims, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk, Nikos C. Kyrpides 29-37
Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT) PDF HTML
Alicia Clum, Matt Nolan, Elke Lang, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Markus Göker, Stefan Spring, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus 38-45
Complete genome sequence of Actinosynnema mirum type strain (101T) PDF HTML
Miriam Land, Alla Lapidus, Shanmugam Mayilraj, Feng Chen, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Olga Chertkov, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, Brian J. Tindall, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk 46-53
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T) PDF HTML
Cliff Han, Stefan Spring, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Elizabeth Saunders, Olga Chertkov, Thomas Brettin, Markus Göker, Manfred Rohde, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, John C. Detter 54-62

Standard Operating Procedure

Standard Operating Procedure for the Annotations of Microbial Genomes by the Production Genomic Facility of the DOE JGI PDF HTML
Konstantinos Mavromatis, Natalia Ivanova, Amy Chen, Ernest Szeto, Victor Markowitz, Nikos C. Kyrpides 63-67

Community Dialog

Meeting Reports from the Genomic Standards Consortium (GSC) Workshops 6 and 7 PDF HTML
Dawn Field, Peter Sterk, Nikos C. Kyrpides, Renzo Kottmann, Frank Oliver Glöckner, Lynette Hirschman, George M. Garrity, John Wooley, Paul Gilna 68-71
Meeting report for SIGS1: First Conference of the Standards in Genomic Sciences eJournal PDF HTML
Oranmiyan W. Nelson, Scott H. Harrison, George M. Garrity 72-76

White Paper

Executive Summary: Studies on Monitoring and Tracking Genetic Resources PDF HTML
George M. Garrity, Lorraine M. Thompson, David Wayne Ussery, Norman Paskin, Dwight Baker, Philippe Desmeth, David E. Schindel, Perry S. Ong 78-86
Extending Standards for Genomics and Metagenomics Data: A Research Coordination Network for the Genomic Standards Consortium (RCN4GSC) PDF HTML
John Wooley, Dawn Field, Frank Oliver Glöckner 87-90


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ISSN: 1944-3277